MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG18: 9034506-9034565 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAUGCUUCCCUUAUGAGAAAGAGGUAGUUAAGACUUGCAGUGAUGUUUAGAGGCAUUAACACAUGAACAUCACUUUAAGUCUGUGCUAACUCUGCACUCAGUAGCGUCUGCUGAGGU
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Structure
        10         20         30        40        50         
UGCAAUGCUUCCCUUAU-   AA-|   G    UA       C           GAGGCA 
                  GAG   AGAG UAGU  AGACUUG AGUGAUGUUUA      U
                  CUC   UCUC AUCG  UCUGAAU UCACUACAAGU      U
UGGAGUCGUCUGCGAUGA   ACG^   A    UG       U           ACACAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-499_5p
mirBase accessionNone
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Loc-Mir-499_3p*
mirBase accessionNone
Sequence 
38- AACAUCACUUUAAGUCUGUGCU -60
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