MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-499
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr10: 34537733-34537793 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCGCCUUCUCUGUGAGAGCGAGGCAGUUAAGACUUGCAGUGAUGUUUAGUUAAAAUCUUUUCAUGAACAUCACUUUAAGUCUGUACUGCUUCUCCCUCUUUUCCGCACCCCAAGGCC
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Structure
        10        20          30        40        50          
UGGAGCGCCUUCUCUGUG    C--|       UA       C           GUUAAAA 
                  AGAG   GAGGCAGU  AGACUUG AGUGAUGUUUA       \
                  UCUC   CUUCGUCA  UCUGAAU UCACUACAAGU       U
CCGGAACCCCACGCCUUU    CCU^       UG       U           ACUUUUC 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-499_5p
mirBase accessionMIMAT0003643
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Proposed targets TargetScanVert: xtr-miR-499
Star sequence

Xtr-Mir-499_3p*
mirBase accessionNone
Sequence 
39- AACAUCACUUUAAGUCUGUACU -61
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