MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL842794.1: 12667-12725 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGUCCUCUGUCUCUGGGCGGGCAGCUGUUAAGACUUGCAGUGAUGUUUAAUUCUUCUCUACGUGAACAUCACAACAAGUCUAUACAGUUUUCCAGCCCCAUACCUCUGGGACAUGC
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Structure
        10         20         30        40        50         
GCCAGUCCUCUGUCUCU-    -|  C      UA       CA          AUUCUU 
                  GGGC GGG AGCUGU  AGACUUG  GUGAUGUUUA      \
                  CCCG CCU UUGACA  UCUGAAC  CACUACAAGU      C
CGUACAGGGUCUCCAUAC    A^  U      UA       AA          GCAUCU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-499_5p
mirBase accessionNone
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Sha-Mir-499_3p* (predicted)
mirBase accessionNone
Sequence 
37- AACAUCACAACAAGUCUAUACA -59
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