MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-499
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr3: 151138866-151138924 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGCCGUCCCUGUCUUGGGUGGGCAGCUGUUAAGACUUGCAGUGAUGUUUAGCUCCUCUCCAUGUGAACAUCACAGCAAGUCUGUGCUGCUGCCUGCCCCCAUGCUGCCUGGGUAGGG
Get precursor sequence
Structure
        10          20        30        40        50         
CCUGCCGUCCCUGUCUU--|  UG      U  UA        A          GCUCCU 
                   GGG  GGCAGC GU  AGACUUGC GUGAUGUUUA      \
                   CCC  CCGUCG CG  UCUGAACG CACUACAAGU      C
GGGAUGGGUCCGUCGUACC^  GU      U  UG        A          GUACCU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-499_5p
mirBase accessionMIMAT0003381
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
Proposed targets microrna.org: MIMAT0003381
TargetScanVert: rno-miR-499-5p
miRDB: MIMAT0003381
Star sequence

Rno-Mir-499_3p*
mirBase accessionMIMAT0017227
Sequence 
37- AACAUCACAGCAAGUCUGUGCU -59
Get sequence
Proposed targets TargetScanVert: rno-miR-499-3p
miRDB: MIMAT0017227