MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-499
Paralogues
Orthologues Aca-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710541.1: 324420-324479 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCAGCUUCUUCGCCAUUGAGAGAGCGGCAGUUAAGACUUGCAGUGAUGUUUAGAUAAUGUAUUACAUGAACAUCACUUUAAGUCUGUGCUACUUCUCUCCUCACUCUUGACUGCGGGAAG
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Structure
        10          20        30        40        50         
GCAGCUUCUUCGCCAUU-  -|    C  C   UA       C           GAUAAU 
                  GA GAGAG GG AGU  AGACUUG AGUGAUGUUUA      G
                  CU CUCUC UC UCG  UCUGAAU UCACUACAAGU      U
GAAGGGCGUCAGUUCUCA  C^    U  A   UG       U           ACAUUA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-499_5p
mirBase accessionMIMAT0038301
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Ami-Mir-499_3p*
mirBase accessionMIMAT0038302
Sequence 
38- AACAUCACUUUAAGUCUGUGCU -60
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