MirGeneDB ID | Bta-Mir-499 |
Family name |
MIR-499 (all species) |
Seed |
UAAGACU |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-499
|
Paralogues |
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Orthologues |
Aca-Mir-499
Ami-Mir-499
Cfa-Mir-499
Cja-Mir-499
Cli-Mir-499
Cpi-Mir-499
Cpo-Mir-499
Dno-Mir-499
Dre-Mir-499-P1
Dre-Mir-499-P2
Ebu-Mir-499
Eca-Mir-499
Ete-Mir-499
Gga-Mir-499
Gja-Mir-499
Gmo-Mir-499-P1
Hsa-Mir-499
Laf-Mir-499
Lch-Mir-499
Loc-Mir-499
Mal-Mir-499-P1
Mdo-Mir-499
Mml-Mir-499
Mmr-Mir-499
Mmu-Mir-499
Mun-Mir-499
Oan-Mir-499
Ocu-Mir-499
Pab-Mir-499
Pbv-Mir-499
Pma-Mir-499
Rno-Mir-499
Sha-Mir-499
Spt-Mir-499
Sto-Mir-499
Tgu-Mir-499
Tni-Mir-499-P1
Xla-Mir-499-P3
Xla-Mir-499-P4
Xtr-Mir-499
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037340.1: 64292596-64292654 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGUCCCCUGCACCCGGGGCGGGCGGCCGUUAAGACUUGCAGUGAUGUUUAACUCCUCUCCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCCACGCUGCCUGGGCAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGUCCCCUGCACCCG--| C C UA A ACUCCU
GGGCGGG GGC GU AGACUUGC GUGAUGUUUA \
CCUGCCC UCG CG UCUGAACG CACUACAAGU C
GGGACGGGUCCGUCGCACC^ U U UG A GCACCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-499_5p |
mirBase accession | MIMAT0003536 |
Sequence |
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-499
|
Star sequence |
Bta-Mir-499_3p* |
mirBase accession | None |
Sequence |
37- AACAUCACAGCAAGUCUGUGCU -59
Get sequence
|