MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015175358.1: 3981456-3981515 [-]
Precursor
(pre-Mir +30nt flank)
GUUGUUUCGCCAUUGCUGAGGGAGAGGCAGUUAAGACUUGCAGUGAUGUUUAGAUAAUUUAUUACAUGAACAUCACUUUAAGUCUGUGCUAUUUCUCUCCUCACUCUUGACUGCGGGAAG
Get precursor sequence
Structure
        10         20         30        40        50         
GUUGUUUCGCCAUUGCU-    -|     C   UA       C           GAUAAU 
                  GAGG GAGAGG AGU  AGACUUG AGUGAUGUUUA      U
                  CUCC CUCUUU UCG  UCUGAAU UCACUACAAGU      U
GAAGGGCGUCAGUUCUCA    U^     A   UG       U           ACAUUA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-499_5p
mirBase accessionNone
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
Star sequence

Gja-Mir-499_3p*
mirBase accessionNone
Sequence 
38- AACAUCACUUUAAGUCUGUGCU -60
Get sequence