MirGeneDB ID | Eca-Mir-499 |
Family name |
MIR-499 (all species) |
Seed |
UAAGACU |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-499
|
Paralogues |
|
Orthologues |
Aca-Mir-499
Ami-Mir-499
Bta-Mir-499
Cfa-Mir-499
Cja-Mir-499
Cli-Mir-499
Cpi-Mir-499
Cpo-Mir-499
Dno-Mir-499
Dre-Mir-499-P1
Dre-Mir-499-P2
Ebu-Mir-499
Ete-Mir-499
Gga-Mir-499
Gja-Mir-499
Gmo-Mir-499-P1
Hsa-Mir-499
Laf-Mir-499
Lch-Mir-499
Loc-Mir-499
Mal-Mir-499-P1
Mdo-Mir-499
Mml-Mir-499
Mmr-Mir-499
Mmu-Mir-499
Mun-Mir-499
Oan-Mir-499
Ocu-Mir-499
Pab-Mir-499
Pbv-Mir-499
Pma-Mir-499
Rno-Mir-499
Sha-Mir-499
Spt-Mir-499
Sto-Mir-499
Tgu-Mir-499
Tni-Mir-499-P1
Xla-Mir-499-P3
Xla-Mir-499-P4
Xtr-Mir-499
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009169.1: 26712936-26712994 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGUCCCCUGCACCCUGGGCGGGCGGCUGUUAAGACUUGCAGUGAUGUUUAACUCCUCUCCACGUGAACAUCACAGCAAGUCUGUGCUGCUUCCCGUCCCCAUGCUGCCUGGGCAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGUCCCCUGCACCCU--| C U UA A ACUCCU
GGGCGGG GGC GU AGACUUGC GUGAUGUUUA \
CCUGCCC UCG CG UCUGAACG CACUACAAGU C
GGGACGGGUCCGUCGUACC^ U U UG A GCACCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Eca-Mir-499_5p |
mirBase accession | MIMAT0013108 |
Sequence |
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
|
Star sequence |
Eca-Mir-499_3p* |
mirBase accession | MIMAT0013109 |
Sequence |
37- AACAUCACAGCAAGUCUGUGCU -59
Get sequence
|