Mir-499-P1

MirGeneDB ID

Gmo-Mir-499-P1

Family name

MIR-499 (all species)

Seed

UAAGACU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-499

Paralogues

Orthologues

Aca-Mir-499 Ami-Mir-499 Bta-Mir-499 Cfa-Mir-499 Cli-Mir-499 Cpi-Mir-499 Cpo-Mir-499 Dno-Mir-499 Dre-Mir-499-P1 Ebu-Mir-499 Ete-Mir-499 Gga-Mir-499 Gja-Mir-499 Hsa-Mir-499 Lch-Mir-499 Loc-Mir-499 Mal-Mir-499-P1 Mdo-Mir-499 Mml-Mir-499 Mmu-Mir-499 Mun-Mir-499 Oan-Mir-499 Ocu-Mir-499 Pbv-Mir-499 Pma-Mir-499 Rno-Mir-499 Sha-Mir-499 Spt-Mir-499 Sto-Mir-499 Tgu-Mir-499 Tni-Mir-499-P1 Xtr-Mir-499

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2467: 713678-713737 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCCCUACCAACCAUCUCGGAGGGAGGCAGUUAAGACUUGCAGUGAUGUUUAGGGCAUUGAUCACAUGAACAUCACUUUAAGUCUGUGCUGGCUCCCCUCUCCAUCUACACCAUGGCAAC

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Structure

        10          20        30        40        50         
GUCCCUACCAACCAUCUC--|GA     G    UA       C           GGGCAU 
                    G  GGGAG CAGU  AGACUUG AGUGAUGUUUA      U
                    C  CCCUC GUCG  UCUGAAU UCACUACAAGU      G
CAACGGUACCACAUCUACCU^UC     G    UG       U           ACACUA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-499-P1_5p

mirBase accession

MIMAT0044196

Sequence

0- UUAAGACUUGCAGUGAUGUUUA -22

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Star sequence

Gmo-Mir-499-P1_3p*

mirBase accession

MIMAT0044197

Sequence

38- AACAUCACUUUAAGUCUGUGCU -60

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