MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-499-P1

Family name MIR-499 (all species)
Seed UAAGACU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-499
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Pma-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xtr-Mir-499 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2467: 713678-713737 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCCUACCAACCAUCUCGGAGGGAGGCAGUUAAGACUUGCAGUGAUGUUUAGGGCAUUGAUCACAUGAACAUCACUUUAAGUCUGUGCUGGCUCCCCUCUCCAUCUACACCAUGGCAAC
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Structure
        10          20        30        40        50         
GUCCCUACCAACCAUCUC--|GA     G    UA       C           GGGCAU 
                    G  GGGAG CAGU  AGACUUG AGUGAUGUUUA      U
                    C  CCCUC GUCG  UCUGAAU UCACUACAAGU      G
CAACGGUACCACAUCUACCU^UC     G    UG       U           ACACUA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-499-P1_5p
mirBase accessionMIMAT0044196
Sequence 
0- UUAAGACUUGCAGUGAUGUUUA -22
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Star sequence

Gmo-Mir-499-P1_3p*
mirBase accessionMIMAT0044197
Sequence 
38- AACAUCACUUUAAGUCUGUGCU -60
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