MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-499

Family name MIR-499 (all species)
Seed UAAGACU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-499  Ami-Mir-499  Bta-Mir-499  Cfa-Mir-499  Cja-Mir-499  Cli-Mir-499  Cpi-Mir-499  Cpo-Mir-499  Dno-Mir-499  Dre-Mir-499-P1  Dre-Mir-499-P2  Ebu-Mir-499  Eca-Mir-499  Ete-Mir-499  Gga-Mir-499  Gja-Mir-499  Gmo-Mir-499-P1  Hsa-Mir-499  Laf-Mir-499  Lch-Mir-499  Loc-Mir-499  Mal-Mir-499-P1  Mdo-Mir-499  Mml-Mir-499  Mmr-Mir-499  Mmu-Mir-499  Mun-Mir-499  Oan-Mir-499  Ocu-Mir-499  Pab-Mir-499  Pbv-Mir-499  Rno-Mir-499  Sha-Mir-499  Spt-Mir-499  Sto-Mir-499  Tgu-Mir-499  Tni-Mir-499-P1  Xla-Mir-499-P3  Xla-Mir-499-P4  Xtr-Mir-499 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046097.1: 5133379-5133437 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGGCACAGGGCCAUGAGGAUGAGGCGGUUAAGACUUGCAGUGAUGUUCACUUUGCAACUUCAUGAACAUCACCCCAAGUCUGCUCCGUCUCGAUCUCACACGGCACCAGAGGUGGC
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Structure
        10          20        30        40        50         
GCGAGGCACAGGGCCAU--|   A        UUA       CA          CUUUGC 
                   GAGG UGAGGCGG   AGACUUG  GUGAUGUUCA      \
                   CUCU GCUCUGCC   UCUGAAC  CACUACAAGU      A
CGGUGGAGACCACGGCACA^   A        UCG       CC          ACUUCA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-499_5p
mirBase accessionNone
Sequence 
0- UUAAGACUUGCAGUGAUGUUCA -22
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Star sequence

Pma-Mir-499_3p* (predicted)
mirBase accessionNone
Sequence 
37- AACAUCACCCCAAGUCUGCUCC -59
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