MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-147-P3a-v1

Family name MIR-147 (all species)
Seed UGUGCGG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2 
Orthologues Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Eca-Mir-147  Gga-Mir-147  Lch-Mir-147  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pma-Mir-147  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) G. japonicus
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015177031.1: 495733-495792 [+]
Precursor
(pre-Mir +30nt flank)
AGUCUUUCCAAAUAACACUCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUAGAGGAUUGAAACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUCCAUUUUAAAAA
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Structure
        10          20        30        40        50         
AGUCUUUCCAAAUAACA--|    U    C   UG   U            AACUAGAGG 
                   CUCUA GAAU UAG  GAA CAUUUCUGCACA         A
                   GGGAU UUUA AUC  CUU GUAAAGGCGUGU         U
AAAAAUUUUACCUCCCUCU^    U    C   GU   C            GACCAAAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-147-P3a-v1_5p*
mirBase accessionNone
Sequence 
0- GUGGAAUCAUUUCUGCACAAAC -22
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Mature sequence

Gja-Mir-147-P3a-v1_3p
mirBase accessionNone
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
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