MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cja-Mir-147  Cli-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635859.1: 1213249-1213306 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCUCCUUGACUUGGCGCCUAUCAAUCUCCCGGAAUCAUUUCUGCACAAACUCGGUACUGGAACAGUGUGCGGAAAUGCUUCUGGUACAUUUUUAGGACUUUAUCCCAAGAGCUUCA
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Structure
        10          20        30        40        50        
UUGCUCCUUGACUUGGCG--|   UC   CUC      U            AACUCGGU 
                    CCUA  AAU   CCGGAA CAUUUCUGCACA        A
                    GGAU  UUA   GGUCUU GUAAAGGCGUGU        C
ACUUCGAGAACCCUAUUUCA^   UU   CAU      C            GACAAGGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-147_5p*
mirBase accessionNone
Sequence 
0- CCGGAAUCAUUUCUGCACAAACUC -24
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Mature sequence

Cmi-Mir-147_3p
mirBase accessionNone
Sequence 
36- GUGUGCGGAAAUGCUUCUGGUA -58
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