Mir-147-P2-v2

MirGeneDB ID

Cfa-Mir-147-P2-v2

Family name

MIR-147 (all species)

Seed

GUGUGCG

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Mir-147-P1-v1 Cfa-Mir-147-P1-v2 Cfa-Mir-147-P2-v1

Orthologues

Bta-Mir-147 Cja-Mir-147 Cli-Mir-147 Cmi-Mir-147 Eca-Mir-147 Gga-Mir-147 Lch-Mir-147 Mdo-Mir-147 Mml-Mir-147 Mmr-Mir-147 Mmu-Mir-147 Neu-Mir-147 Oan-Mir-147 Ocu-Mir-147 Pab-Mir-147 Pma-Mir-147 Sha-Mir-147 Spt-Mir-147 Tgu-Mir-147 Tni-Mir-147

Node of Origin (locus)

C. familiaris

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr15: 58855319-58855376 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUUCCAAAGAGUAAUCUAUGAAUCUAGUGGAAACAUCGCUGCACAAACUCGAUUAUGGAUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCUUGACUACAUUUUCGGA

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Structure

        10          20        30        40        50        
UUUCUUCCAAAGAGUAA--|   U    C   UG   A   CG       AACUCGAUU 
                   UCUA GAAU UAG  GAA CAU  CUGCACA         A
                   GGAU UUUA AUC  CUU GUA  GGCGUGU         U
AGGCUUUUACAUCAGUUCG^   U    C   GU   C   AA       GACCAUAGG 
      110       100        90        80        70        60

Deep sequencing

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Comment

Although there are three potential precursor sequences in the assembled dog genome, one one of them is supported by read data for both the 5p and 3p arm so only one copy of Mir-147 is annotated here.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-147-P2-v2_5p* (predicted)

mirBase accession

None

Sequence

0- UGGAAACAUCGCUGCACAAACUC -23

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Mature sequence

Cfa-Mir-147-P2-v2_3p

mirBase accession

None

Sequence

36- AGUGUGCGGAAAUGCUUCUGCU -58

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