MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-147
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cja-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold702: 40106-40165 [+]
Precursor
(pre-Mir +30nt flank)
UGUUGCCCAAAAAGGUACCCUAUGAAUCUAGUGGAAUCACUUCUGCACAAACUUGACUACUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUGCAUUUUUUGGA
Get precursor sequence
Structure
        10          20        30        40        50         
UGUUGCCCAAAAAGGUA--|    U    C   UG   U  C         AACUUGACU 
                   CCCUA GAAU UAG  GAA CA UUCUGCACA         A
                   GGGAU UUUA AUC  CUU GU AAGGCGUGU         C
AGGUUUUUUACGUCCCUCU^    U    C   GU   C  A         GACUAAAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-147_5p*
mirBase accessionNone
Sequence 
0- GUGGAAUCACUUCUGCACAAACU -23
Get sequence
Mature sequence

Cli-Mir-147_3p
mirBase accessionMIMAT0038541
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence