MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-147-v1

Family name MIR-147 (all species)
Seed UGUGCGG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-147
Paralogues Cpo-Mir-147-v2 
Orthologues Aca-Mir-147-v1  Ami-Mir-147-v1  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Dno-Mir-147-v1  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v1  Lch-Mir-147  Loc-Mir-147-v1  Mal-Mir-147-v1  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pma-Mir-147  Rno-Mir-147-v1  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_23: 20636311-20636370 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-147-v1)		 Mir-147-v1 scaffold_23: 20636311-20636370 [+] UCSC
Mir-147-v2 scaffold_23: 20636312-20636369 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCUCUUGUCCCAAGUGCUCUAUGAAUCUAGCGGAAACACUUCCGGACAGGCUUGGGUCUGGACACCAGUGUGCGGAAGUGCUUCUGCUAAGUUUUUAGGGUGUCUGCUUCCUUUGGACU
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Structure
        10          20        30        40          50        
GCCUCUUGUCCCAAGUG--     U   UC        A        G   --| CUUGGG 
                   CUCUA GAA  UAGCGGAA CACUUCCG ACA  GG      U
                   GGGAU UUU  AUCGUCUU GUGAAGGC UGU  CC      C
UCAGGUUUCCUUCGUCUGU     U   GA        C        G   GA^ ACAGGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-147-v1_5p* (predicted)
mirBase accessionMIMAT0047020
Sequence 
0- GCGGAAACACUUCCGGACAGGC -22
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Mature sequence

Cpo-Mir-147-v1_3p
mirBase accessionMIMAT0047021
Sequence 
38- GUGUGCGGAAGUGCUUCUGCUA -60
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