MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009148.1: 145486075-145486134 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCUUCCCAAGAGUACUCUAUGAAUCUAGUGGAAACACUUCUGCACAAACUAGAUUAUGGGUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCUUGCCUACUUUUUCGGAC
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Structure
        10          20        30        40        50         
CUUUCUUCCCAAGAGUA--|    U    C   UG   A  C         AACUAGAUU 
                   CUCUA GAAU UAG  GAA CA UUCUGCACA         A
                   GGGAU UUUA AUC  CUU GU AAGGCGUGU         U
CAGGCUUUUUCAUCCGUUC^    U    C   GU   C  A         GACCAUGGG 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-147_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGAAACACUUCUGCACAAAC -22
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Mature sequence

Eca-Mir-147_3p
mirBase accessionNone
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
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