MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-147-v2

Family name MIR-147 (all species)
Seed GUGUGCG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-147
Paralogues Cpi-Mir-147-v1 
Orthologues Aca-Mir-147-v2  Ami-Mir-147-v2  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpo-Mir-147-v2  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v2  Lch-Mir-147  Loc-Mir-147-v2  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584828: 2425586-2425643 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-147-v2)		 Mir-147-v1 JH584828: 2425585-2425644 [-] UCSC Ensembl
Mir-147-v2 JH584828: 2425586-2425643 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCCUCAAAAAUGUACUCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUCGACUACUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUACAUUUUUGGA
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Structure
        10          20        30        40        50        
UUGCCUCAAAAAUGUAC--|   U    C   UG   U            AACUCGACU 
                   UCUA GAAU UAG  GAA CAUUUCUGCACA         A
                   GGAU UUUA AUC  CUU GUAAAGGCGUGU         C
AGGUUUUUACAUCCCUCUG^   U    C   GU   C            GACUAAAGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-147-v2_5p*
mirBase accessionMIMAT0037780
Sequence 
0- UGGAAUCAUUUCUGCACAAACU -22
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Mature sequence

Cpi-Mir-147-v2_3p
mirBase accessionMIMAT0037781
Sequence 
36- AGUGUGCGGAAAUGCUUCUGCU -58
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