MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-147

Family name MIR-147 (all species)
Seed UGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL834512.1: 233302-233361 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUUCCUUCUAAAUCACACACUGAAUCUAAUGGAAACAUUUCUGCACAAACUAGACUAUUGAAACCAGUGUGCAAAAUUGCUUCUGCUACAUUUUUAGGAAUACAUAGGAAAUUUCCAU
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Structure
        10        20          30        40        50         
AGUUUCCUUCUAAAUCACACA     UC--| AU    A  U  C      AACUAGACU 
                     CUGAA    UA  GGAA CA UU UGCACA         A
                     GAUUU    AU  UCUU GU AA ACGUGU         U
UACCUUUAAAGGAUACAUAAG     UUAC^ CG    C  U  A      GACCAAAGU 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-147_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUGGAAACAUUUCUGCACAAAC -22
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Mature sequence

Sha-Mir-147_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGUGCAAAAUUGCUUCUGCUA -60
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