MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-147-v2

Family name MIR-147 (all species)
Seed GUGUGCG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-147
Paralogues Ami-Mir-147-v1 
Orthologues Aca-Mir-147-v2  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v2  Cpo-Mir-147-v2  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v2  Lch-Mir-147  Loc-Mir-147-v2  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 16718631-16718688 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-147-v2)		 Mir-147-v1 NW_017713709.1: 16718630-16718689 [-] UCSC
Mir-147-v2 NW_017713709.1: 16718631-16718688 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAUUGCCUCAAAGGUACUCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUCGACUAUUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUACAUUUUUGGA
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Structure
        10          20        30        40        50        
CAUUGCCUCAAAGGUAC--|   U    C   UG   U            AACUCGACU 
                   UCUA GAAU UAG  GAA CAUUUCUGCACA         A
                   GGAU UUUA AUC  CUU GUAAAGGCGUGU         U
AGGUUUUUACAUCCCUCUG^   U    C   GU   C            GACUAAAGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-147-v2_5p*
mirBase accessionMIMAT0038176
Sequence 
0- UGGAAUCAUUUCUGCACAAACU -22
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Mature sequence

Ami-Mir-147-v2_3p
mirBase accessionMIMAT0038177
Sequence 
36- AGUGUGCGGAAAUGCUUCUGCU -58
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