MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-147
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Eca-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 10: 11118953-11119012 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGCCUCUAAAGGUACUCUAUGAAUCUAGUGGAAUCACUUCUGCACAAACUUGACUACUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUCCAUUUUUUGGG
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Structure
        10          20        30        40        50         
UGUUGCCUCUAAAGGUA--|    U    C   UG   U  C         AACUUGACU 
                   CUCUA GAAU UAG  GAA CA UUCUGCACA         A
                   GGGAU UUUA AUC  CUU GU AAGGCGUGU         C
GGGUUUUUUACCUCCCUCU^    U    C   GU   C  A         GACUAAAGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-147_5p*
mirBase accessionNone
Sequence 
0- GUGGAAUCACUUCUGCACAAACU -23
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Mature sequence

Gga-Mir-147_3p
mirBase accessionMIMAT0003352
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
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Proposed targets TargetScanVert: gga-miR-147
miRDB: MIMAT0003352