MirGeneDB ID | Cfa-Mir-147-P2-v1 |
Family name |
MIR-147 (all species) |
Seed |
UGUGCGG |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
Cfa-Mir-147-P1-v1
Cfa-Mir-147-P1-v2
Cfa-Mir-147-P2-v2
|
Orthologues |
Bta-Mir-147
Cja-Mir-147
Cli-Mir-147
Cmi-Mir-147
Eca-Mir-147
Gga-Mir-147
Lch-Mir-147
Mdo-Mir-147
Mml-Mir-147
Mmr-Mir-147
Mmu-Mir-147
Neu-Mir-147
Oan-Mir-147
Ocu-Mir-147
Pab-Mir-147
Pma-Mir-147
Sha-Mir-147
Spt-Mir-147
Tgu-Mir-147
Tni-Mir-147
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
Vertebrata
|
Genome context (canFam3_add) |
chr15: 58855318-58855377 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUUCUUCCAAAGAGUAAUCUAUGAAUCUAGUGGAAACAUCGCUGCACAAACUCGAUUAUGGAUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCUUGACUACAUUUUCGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUUCUUCCAAAGAGUAA--| U C UG A CG AACUCGAUU
UCUA GAAU UAG GAA CAU CUGCACA A
GGAU UUUA AUC CUU GUA GGCGUGU U
CAGGCUUUUACAUCAGUUCG^ U C GU C AA GACCAUAGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there are three potential precursor sequences in the assembled dog genome, one one of them is supported by read data for both the 5p and 3p arm so only one copy of Mir-147 is annotated here. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Star sequence |
Cfa-Mir-147-P2-v1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUGGAAACAUCGCUGCACAAACU -23
Get sequence
|
Mature sequence |
Cfa-Mir-147-P2-v1_3p |
mirBase accession | None |
Sequence |
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence
|