Mir-147

MirGeneDB ID

Oan-Mir-147

Family name

MIR-147 (all species)

Seed

GCGGAAU

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-147

Paralogues

Orthologues

Aca-Mir-147-v1 Aca-Mir-147-v2 Ami-Mir-147-v1 Ami-Mir-147-v2 Bta-Mir-147 Cfa-Mir-147-P1-v1 Cfa-Mir-147-P1-v2 Cfa-Mir-147-P2-v1 Cfa-Mir-147-P2-v2 Cja-Mir-147 Cli-Mir-147 Cmi-Mir-147 Cpi-Mir-147-v1 Cpi-Mir-147-v2 Cpo-Mir-147-v1 Cpo-Mir-147-v2 Dno-Mir-147-v1 Dno-Mir-147-v2 Eca-Mir-147 Gga-Mir-147 Gja-Mir-147-P3a-v1 Gja-Mir-147-P3a-v2 Gja-Mir-147-P3b-v1 Gja-Mir-147-P3b-v2 Hsa-Mir-147-v1 Hsa-Mir-147-v2 Laf-Mir-147-P4 Laf-Mir-147-P5 Lch-Mir-147 Loc-Mir-147-v1 Loc-Mir-147-v2 Mal-Mir-147-v1 Mal-Mir-147-v2 Mdo-Mir-147 Mml-Mir-147 Mmr-Mir-147 Mmu-Mir-147 Neu-Mir-147 Ocu-Mir-147 Pab-Mir-147 Pbv-Mir-147-v1 Pbv-Mir-147-v2 Pma-Mir-147 Rno-Mir-147-v1 Rno-Mir-147-v2 Sha-Mir-147 Spt-Mir-147 Tgu-Mir-147 Tni-Mir-147

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041732.1: 18473932-18473992 [-]

Precursor
(pre-Mir +30nt flank)

AGCCACCGCCCCCCGUCCCCCUGGGAAUCCAGCGGAAUCACCUCUGCACAAACUCGUCUUCUGAACCAGUGUGCGGAGAUGCUUCCGCCGCAUUCUCAGGGUCUCCCCACGUCCGGGGUCU

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Structure

        10          20        30        40        50          
AGCCACCGCCCCCCGUCC--|         CCA      U  C         AACUCGUCU 
                    CCCUGGGAAU   GCGGAA CA CUCUGCACA         \
                    GGGACUCUUA   CGCCUU GU GAGGCGUGU         U
UCUGGGGCCUGCACCCCUCU^         CGC      C  A         GACCAAGUC 
 .       110       100        90        80        70

Deep sequencing

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Comment

The Drosha cut is shifted -1 relative to most other annotated vertebrates.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-147_5p

mirBase accession

None

Sequence

0- AGCGGAAUCACCUCUGCACAAAC -23

Get sequence

Star sequence

Oan-Mir-147_3p*

mirBase accession

MIMAT0007003

Sequence

38- GUGUGCGGAGAUGCUUCCGCCGC -61

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