MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-147-v1

Family name MIR-147 (all species)
Seed UGUGCGG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-147
Paralogues Ami-Mir-147-v2 
Orthologues Aca-Mir-147-v1  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpo-Mir-147-v1  Dno-Mir-147-v1  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v1  Lch-Mir-147  Loc-Mir-147-v1  Mal-Mir-147-v1  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pma-Mir-147  Rno-Mir-147-v1  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713709.1: 16718630-16718689 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-147-v1)		 Mir-147-v1 NW_017713709.1: 16718630-16718689 [-] UCSC
Mir-147-v2 NW_017713709.1: 16718631-16718688 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCAUUGCCUCAAAGGUACUCUAUGAAUCUAGUGGAAUCAUUUCUGCACAAACUCGACUAUUGAAAUCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGUCUCCCUACAUUUUUGGAC
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Structure
        10          20        30        40        50         
CCAUUGCCUCAAAGGUA--|    U    C   UG   U            AACUCGACU 
                   CUCUA GAAU UAG  GAA CAUUUCUGCACA         A
                   GGGAU UUUA AUC  CUU GUAAAGGCGUGU         U
CAGGUUUUUACAUCCCUCU^    U    C   GU   C            GACUAAAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-147-v1_5p* (predicted)
mirBase accessionMIMAT0038176
Sequence 
0- GUGGAAUCAUUUCUGCACAAAC -22
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Mature sequence

Ami-Mir-147-v1_3p
mirBase accessionMIMAT0038177
Sequence 
38- GUGUGCGGAAAUGCUUCUGCUA -60
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