MirGeneDB ID | Tni-Mir-147 |
Family name |
MIR-147 (all species) |
Seed |
UGUGCGG |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-147-v1
Aca-Mir-147-v2
Ami-Mir-147-v1
Ami-Mir-147-v2
Bta-Mir-147
Cfa-Mir-147-P1-v1
Cfa-Mir-147-P1-v2
Cfa-Mir-147-P2-v1
Cfa-Mir-147-P2-v2
Cja-Mir-147
Cli-Mir-147
Cmi-Mir-147
Cpi-Mir-147-v1
Cpi-Mir-147-v2
Cpo-Mir-147-v1
Cpo-Mir-147-v2
Dno-Mir-147-v1
Dno-Mir-147-v2
Eca-Mir-147
Gga-Mir-147
Gja-Mir-147-P3a-v1
Gja-Mir-147-P3a-v2
Gja-Mir-147-P3b-v1
Gja-Mir-147-P3b-v2
Hsa-Mir-147-v1
Hsa-Mir-147-v2
Laf-Mir-147-P4
Laf-Mir-147-P5
Lch-Mir-147
Loc-Mir-147-v1
Loc-Mir-147-v2
Mal-Mir-147-v1
Mal-Mir-147-v2
Mdo-Mir-147
Mml-Mir-147
Mmr-Mir-147
Mmu-Mir-147
Neu-Mir-147
Oan-Mir-147
Ocu-Mir-147
Pab-Mir-147
Pbv-Mir-147-v1
Pbv-Mir-147-v2
Pma-Mir-147
Rno-Mir-147-v1
Rno-Mir-147-v2
Sha-Mir-147
Spt-Mir-147
Tgu-Mir-147
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
5: 10212485-10212547 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUUCCUGGCCGGCCCCUCAUCAGUCUAACAGAAUCCUUUCUGCACAAACUAGAAUGAUUUGACACUCAGUGUGCGGAAACGCUUCUGCUCCACUGGUGGGGUUUCACCCUGGUCCGUACC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGCUUCCUGGCCGGCC--| CUAA UCC AACUAGAAUGA
CCUCAUCAGU CAGAA UUUCUGCACA \
GGGGUGGUCA GUCUU AAAGGCGUGU U
CCAUGCCUGGUCCCACUUU^ CCUC CGC GACUCACAGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tni-Mir-147_5p* |
mirBase accession | None |
Sequence |
0- ACAGAAUCCUUUCUGCACAAAC -22
Get sequence
|
Mature sequence |
Tni-Mir-147_3p |
mirBase accession | None |
Sequence |
41- GUGUGCGGAAACGCUUCUGCUC -63
Get sequence
|