MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-147-v2

Family name MIR-147 (all species)
Seed ACGGAAU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-147-v1 
Orthologues Aca-Mir-147-v2  Ami-Mir-147-v2  Bta-Mir-147  Cja-Mir-147  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v2  Cpo-Mir-147-v2  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Hsa-Mir-147-v2  Lch-Mir-147  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG3: 39226443-39226503 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCACCAGCCUGCCUGCACCCUAUCAAUCUAACGGAAUCAUUUCUGCACAGACUAGACUCUGAGAACCAGUGUGCGGAAAUGCUUCUGCUACAUUGGUAGGGUCUGACCACCAACAGGUCU
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Structure
        10         20        30        40        50        60
UCCACCAGCCUGCCUGC-|          C  A     U            GACUAGACU 
                  ACCCUAUCAAU UA CGGAA CAUUUCUGCACA         C
                  UGGGAUGGUUA AU GUCUU GUAAAGGCGUGU         U
UCUGGACAACCACCAGUC^          C  C     C            GACCAAGAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-147-v2_5p
mirBase accessionNone
Sequence 
0- AACGGAAUCAUUUCUGCACAGACU -24
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Star sequence

Loc-Mir-147-v2_3p*
mirBase accessionNone
Sequence 
39- GUGUGCGGAAAUGCUUCUGCUA -61
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