MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-147

Family name MIR-147 (all species)
Seed UGUGCGG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-147-v1  Aca-Mir-147-v2  Ami-Mir-147-v1  Ami-Mir-147-v2  Bta-Mir-147  Cfa-Mir-147-P1-v1  Cfa-Mir-147-P1-v2  Cfa-Mir-147-P2-v1  Cfa-Mir-147-P2-v2  Cli-Mir-147  Cmi-Mir-147  Cpi-Mir-147-v1  Cpi-Mir-147-v2  Cpo-Mir-147-v1  Cpo-Mir-147-v2  Dno-Mir-147-v1  Dno-Mir-147-v2  Eca-Mir-147  Gga-Mir-147  Gja-Mir-147-P3a-v1  Gja-Mir-147-P3a-v2  Gja-Mir-147-P3b-v1  Gja-Mir-147-P3b-v2  Hsa-Mir-147-v1  Hsa-Mir-147-v2  Laf-Mir-147-P4  Laf-Mir-147-P5  Lch-Mir-147  Loc-Mir-147-v1  Loc-Mir-147-v2  Mal-Mir-147-v1  Mal-Mir-147-v2  Mdo-Mir-147  Mml-Mir-147  Mmr-Mir-147  Mmu-Mir-147  Neu-Mir-147  Oan-Mir-147  Ocu-Mir-147  Pab-Mir-147  Pbv-Mir-147-v1  Pbv-Mir-147-v2  Pma-Mir-147  Rno-Mir-147-v1  Rno-Mir-147-v2  Sha-Mir-147  Spt-Mir-147  Tgu-Mir-147  Tni-Mir-147 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 28688268-28688327 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUGUUUUGAAGAGUACUCUAUAAAUUUAGUGGAAACAUUUCUGUGCAAACUAGAUUCUAGACACCAGUGUGCGGAAGCGCUUCUGCUACAUUUUUAGGGUUUGUCUACAUUUUUUGGA
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Structure
        10          20        30        40        50         
CUUUGUUUUGAAGAGUA--|    U    U   UG   ACA      UG  AACUAGAUU 
                   CUCUA AAAU UAG  GAA   UUUCUG  CA         C
                   GGGAU UUUA AUC  CUU   GAAGGC  GU         U
AGGUUUUUUACAUCUGUUU^    U    C   GU   CGC      GU  GACCACAGA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-147_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGAAACAUUUCUGUGCAAACU -23
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Mature sequence

Cja-Mir-147_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGUGCGGAAGCGCUUCUGCUA -60
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