MirGeneDB ID | Bta-Mir-147 |
Family name |
MIR-147 (all species) |
Seed |
UGUGCGG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-147
|
Paralogues |
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Orthologues |
Aca-Mir-147-v1
Aca-Mir-147-v2
Ami-Mir-147-v1
Ami-Mir-147-v2
Cfa-Mir-147-P1-v1
Cfa-Mir-147-P1-v2
Cfa-Mir-147-P2-v1
Cfa-Mir-147-P2-v2
Cja-Mir-147
Cli-Mir-147
Cmi-Mir-147
Cpi-Mir-147-v1
Cpi-Mir-147-v2
Cpo-Mir-147-v1
Cpo-Mir-147-v2
Dno-Mir-147-v1
Dno-Mir-147-v2
Eca-Mir-147
Gga-Mir-147
Gja-Mir-147-P3a-v1
Gja-Mir-147-P3a-v2
Gja-Mir-147-P3b-v1
Gja-Mir-147-P3b-v2
Hsa-Mir-147-v1
Hsa-Mir-147-v2
Laf-Mir-147-P4
Laf-Mir-147-P5
Lch-Mir-147
Loc-Mir-147-v1
Loc-Mir-147-v2
Mal-Mir-147-v1
Mal-Mir-147-v2
Mdo-Mir-147
Mml-Mir-147
Mmr-Mir-147
Mmu-Mir-147
Neu-Mir-147
Oan-Mir-147
Ocu-Mir-147
Pab-Mir-147
Pbv-Mir-147-v1
Pbv-Mir-147-v2
Pma-Mir-147
Rno-Mir-147-v1
Rno-Mir-147-v2
Sha-Mir-147
Spt-Mir-147
Tgu-Mir-147
Tni-Mir-147
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037337.1: 65015867-65015926 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUCUUCCAAAGAGUACUCUAUGAAUCUAGUGGAAACACUUCUGCACAGGCUAGAUUAUGGAUACCAGUGUGCGGAAAUGCUUCUGCUACAUUUUUAGGGCCUGCCUACGUUUUUGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUCUUCCAAAGAGUA-- U C UG A C --| CUAGAU
CUCUA GAAU UAG GAA CA UUCUGCACA GG U
GGGAU UUUA AUC CUU GU AAGGCGUGU CC A
CAGGUUUUUGCAUCCGUCC U C GU C A GA^ AUAGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The Drosha cut is shifted -1 relative to most other taxa. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-147_5p* |
mirBase accession | None |
Sequence |
0- GUGGAAACACUUCUGCACAGGCU -23
Get sequence
|
Mature sequence |
Bta-Mir-147_3p |
mirBase accession | MIMAT0009237 |
Sequence |
38- GUGUGCGGAAAUGCUUCUGCUA -60
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-147
|