MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-208-P2

Family name MIR-208 (all species)
Seed UAAGACG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cja-Mir-208-P2  Cpi-Mir-208-P2  Cpo-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Lch-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Rno-Mir-208-P2  Sha-Mir-208-P2  Spt-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015162067.1: 49391-49450 [+]
Precursor
(pre-Mir +30nt flank)
CAUGCCUCACAGGUGUUUCCUCUAACGGCGAAGCUUUUGGCUCGGGUUAUAUUUUAAAAUGGCAGCGUAUAAGACGAGCAAAAAGCUUGUUGGUUGGAGGAGAAAUCCCCACUAAAAAGG
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Structure
        10          20         30        40        50         
CAUGCCUCACAGGUGUU--        -|   G        G     GG      UUUAAA 
                   UCCUCUAA CGGC AAGCUUUU GCUCG  UUAUAU      A
                   AGGAGGUU GUUG UUCGAAAA CGAGC  AAUAUG      U
GGAAAAAUCACCCCUAAAG        G^   -        A     AG      CGACGG 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-208-P2_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUGGCUCGGGUUAUAU -22
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Mature sequence

Gja-Mir-208-P2_3p
mirBase accessionNone
Sequence 
38- AUAAGACGAGCAAAAAGCUUGU -60
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