Mir-208-P2

MirGeneDB ID

Rno-Mir-208-P2

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-208a

Paralogues

Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2

Orthologues

Aca-Mir-208-P2 Ami-Mir-208-P2 Bta-Mir-208-P2 Cfa-Mir-208-P2 Cja-Mir-208-P2 Cpi-Mir-208-P2 Cpo-Mir-208-P2 Dno-Mir-208-P2 Eca-Mir-208-P2 Ete-Mir-208-P2 Gja-Mir-208-P2 Hsa-Mir-208-P2 Laf-Mir-208-P2 Lch-Mir-208-P2 Mdo-Mir-208-P2 Mml-Mir-208-P2 Mmu-Mir-208-P2 Oan-Mir-208-P2 Ocu-Mir-208-P2 Pab-Mir-208-P2 Pbv-Mir-208-P2 Sha-Mir-208-P2 Spt-Mir-208-P2 Xla-Mir-208-P2a Xla-Mir-208-P2b Xtr-Mir-208-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr15: 33613463-33613519 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P2)

Mir-208-P2 chr15: 33613463-33613519 [-] UCSC Ensembl
Mir-208-P1-v1 chr15: 33639539-33639595 [-] UCSC Ensembl
Mir-208-P1-v2 chr15: 33639539-33639595 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGACCCUUGCUUACUUCCUUUGACGGGUGAGCUUUUGGCCCGGGUUAUACCUGACUCUCACGUAUAAGACGAGCAAAAAGCUUGUUGGUCAGAGGAGCUAUCGUCUCUCAGCCUG

Get precursor sequence

Structure

        10          20        30        40        50        
GCUGACCCUUGCUUACU--|        G  UG       G  C  GG      CUGAC 
                   UCCUUUGAC GG  AGCUUUU GC CG  UUAUAC     \
                   AGGAGACUG UU  UCGAAAA CG GC  AAUAUG     U
GUCCGACUCUCUGCUAUCG^        G  GU       A  A  AG      CACUC 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-208-P2_5p*

mirBase accession

MIMAT0017155

Sequence

0- GAGCUUUUGGCCCGGGUUAUAC -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-208a-5p
miRDB: MIMAT0017155

Mature sequence

Rno-Mir-208-P2_3p

mirBase accession

MIMAT0000880

Sequence

35- AUAAGACGAGCAAAAAGCUUGU -57

Get sequence

Proposed targets

microrna.org: MIMAT0000880
TargetScanVert: rno-miR-208a-3p
miRDB: MIMAT0000880