MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-208-P2

Family name MIR-208 (all species)
Seed UAAGACG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-208a
Paralogues Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2 
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cja-Mir-208-P2  Cpi-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Gja-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Lch-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Rno-Mir-208-P2  Sha-Mir-208-P2  Spt-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_13: 17471070-17471126 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-208-P2)		 Mir-208-P1-v1 scaffold_13: 17445268-17445324 [+] UCSC
Mir-208-P1-v2 scaffold_13: 17445268-17445324 [+] UCSC
Mir-208-P2 scaffold_13: 17471070-17471126 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCUGGCCCUGACCCACUUCCUGUGACGGGCGAGCUUUUGGCCCGGGUUAUACCUAAUGCUCACGUAUAAGACGAGCAAAAAGCUUGUUGGUCAGAGGAGCACUCAUCGAUCAGCCUA
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Structure
        10          20        30        40        50        
GCUGGCCCUGACCCACU--|   G    G           G  C  GG      CUAAU 
                   UCCU UGAC GGCGAGCUUUU GC CG  UUAUAC     \
                   AGGA ACUG UUGUUCGAAAA CG GC  AAUAUG     G
AUCCGACUAGCUACUCACG^   G    G           A  A  AG      CACUC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-208-P2_5p* (predicted)
mirBase accessionMIMAT0047105
Sequence 
0- GAGCUUUUGGCCCGGGUUAUAC -22
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Mature sequence

Cpo-Mir-208-P2_3p
mirBase accessionMIMAT0047106
Sequence 
35- AUAAGACGAGCAAAAAGCUUGU -57
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