MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-208-P1-v1

Family name MIR-208 (all species)
Seed UAAGACG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-208b
Paralogues Cpo-Mir-208-P1-v2  Cpo-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Bta-Mir-208-P1-v2  Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cja-Mir-208-P1  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Ocu-Mir-208-P1-v2  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_13: 17445268-17445324 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)		 Mir-208-P1-v1 scaffold_13: 17445268-17445324 [+] UCSC
Mir-208-P1-v2 scaffold_13: 17445268-17445324 [+] UCSC
Mir-208-P2 scaffold_13: 17471070-17471126 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCCCAGCCCUACCUCCUGCUCCUCUCAGGAAAGCUUUUUGCUCGAAUUAUGUUUCUCAUCCAAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCUCCCACCUAGGGCAG
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Structure
        10        20          30        40        50        
CCCCAGCCCUACCUCCUG   --|      GA          C   AA      UUCUC 
                  CUC  CUCUCAG  AAGCUUUUUG UCG  UUAUGU     \
                  GAG  GGGAGUC  UUUGGAAAAC AGC  AAUAUA     A
GACGGGAUCCACCCUCGU   UC^      UG          A   AG      AACCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-208-P1-v1_5p* (predicted)
mirBase accessionMIMAT0047107
Sequence 
0- AAGCUUUUUGCUCGAAUUAUGU -22
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Mature sequence

Cpo-Mir-208-P1-v1_3p
mirBase accessionMIMAT0047108
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
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