MirGeneDB ID | Loc-Mir-208-P1e |
Family name |
MIR-208 (all species) |
Seed |
UAAGACG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-208-P1c
Loc-Mir-208-P1d
|
Orthologues |
Bta-Mir-208-P1-v1
Bta-Mir-208-P1-v2
Cfa-Mir-208-P1-v1
Cfa-Mir-208-P1-v2
Cja-Mir-208-P1
Cpo-Mir-208-P1-v1
Cpo-Mir-208-P1-v2
Dno-Mir-208-P1-v1
Dno-Mir-208-P1-v2
Dre-Mir-208-P1
Ebu-Mir-208-o1
Eca-Mir-208-P1-v1
Eca-Mir-208-P1-v2
Gmo-Mir-208-P1
Hsa-Mir-208-P1-v1
Hsa-Mir-208-P1-v2
Laf-Mir-208-P1
Lch-Mir-208-P1
Mal-Mir-208-P1
Mdo-Mir-208-P1
Mml-Mir-208-P1-v1
Mml-Mir-208-P1-v2
Mmr-Mir-208-P1-v1
Mmr-Mir-208-P1-v2
Mmu-Mir-208-P1-v1
Mmu-Mir-208-P1-v2
Mun-Mir-208-P1
Neu-Mir-208-P1
Ocu-Mir-208-P1-v1
Ocu-Mir-208-P1-v2
Pab-Mir-208-P1
Rno-Mir-208-P1-v1
Rno-Mir-208-P1-v2
Sha-Mir-208-P1
Sto-Mir-208-P1
|
Node of Origin (locus) |
L. oculatus
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
JH591418.1: 156141-156196 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAGGUGCUGUUUCAUUUCUUCUAACAGAUAAGCUUUUUGUUUGCGUUAUGUUUAAAUUAGAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGCAGACUGUACGACUGUGCGUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AAAGGUGCUGUUUCAUU--| UCU CG UUAA
UCU AACAGAUAAGCUUUUUGUUUG UUAUGU A
AGA UUGUCUGUUUGAAAAACAAGC AAUAUA U
GUGUGCGUGUCAGCAUGUC^ CGU AG AGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-208-P1e_5p* |
mirBase accession | None |
Sequence |
0- AAGCUUUUUGUUUGCGUUAUGU -22
Get sequence
|
Mature sequence |
Loc-Mir-208-P1e_3p |
mirBase accession | None |
Sequence |
34- AUAAGACGAACAAAAAGUUUGU -56
Get sequence
|