Mir-208-P1d

MirGeneDB ID

Loc-Mir-208-P1d

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-208-P1c Loc-Mir-208-P1e

Orthologues

Bta-Mir-208-P1-v1 Bta-Mir-208-P1-v2 Cfa-Mir-208-P1-v1 Cfa-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Lch-Mir-208-P1 Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mmu-Mir-208-P1-v1 Mmu-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2 Sha-Mir-208-P1 Sto-Mir-208-P1

Node of Origin (locus)

L. oculatus

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

JH591418.1: 188359-188414 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAGGUGCUGUUUCAUUUCUUCUAACAGAUAAGCUUUUUGUUUGCGUUAUGUUUAAAUUAGAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGCAGACUGUACGACUGUGCGUGUG

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Structure

        10          20        30        40        50       
AAAGGUGCUGUUUCAUU--|  UCU                     CG      UUAA 
                   UCU   AACAGAUAAGCUUUUUGUUUG  UUAUGU    A
                   AGA   UUGUCUGUUUGAAAAACAAGC  AAUAUA    U
GUGUGCGUGUCAGCAUGUC^  CGU                     AG      AGAU 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-208-P1d_5p*

mirBase accession

None

Sequence

0- AAGCUUUUUGUUUGCGUUAUGU -22

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Mature sequence

Loc-Mir-208-P1d_3p

mirBase accession

None

Sequence

34- AUAAGACGAACAAAAAGUUUGU -56

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