MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-208-P1

Family name MIR-208 (all species)
Seed UAAGACG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Bta-Mir-208-P1-v2  Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Ocu-Mir-208-P1-v2  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 53578788-53578844 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGGCCCCAGUAUUAUCUCCUCUCAGGGAAGCUUUUUGCUCGAAUUAUGUUUCUGAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUUCCGUCUGGGGCAA
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Structure
        10          20        30        40        50        
CCCUGGCCCCAGUAUUA--|  C        G          C   AA      UUCUG 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
AACGGGGUCUGCCUUCGUG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Cja-Mir-208-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGAAUUAUGU -22
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Mature sequence

Cja-Mir-208-P1_3p (predicted)
mirBase accessionNone
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
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