Mir-208-P1-v1

MirGeneDB ID

Mmu-Mir-208-P1-v1

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-208b

Paralogues

Mmu-Mir-208-P1-v2 Mmu-Mir-208-P2

Orthologues

Bta-Mir-208-P1-v1 Bta-Mir-208-P1-v2 Cfa-Mir-208-P1-v1 Cfa-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Lch-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2 Sha-Mir-208-P1 Sto-Mir-208-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr14: 54975710-54975766 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P1-v1)

Mir-208-P2 chr14: 54949072-54949128 [-] UCSC Ensembl
Mir-208-P1-v1 chr14: 54975710-54975766 [-] UCSC Ensembl
Mir-208-P1-v2 chr14: 54975710-54975766 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCUCCCACCUGGGGUAC

Get precursor sequence

Structure

        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG      UUCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
CAUGGGGUCCACCCUCGU   UC^       G          A   AG      AGCCU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-208-P1-v1_5p*

mirBase accession

MIMAT0017280

Sequence

0- AAGCUUUUUGCUCGCGUUAUGU -22

Get sequence

Proposed targets

TargetScanVert: mmu-miR-208b-5p
miRDB: MIMAT0017280

Mature sequence

Mmu-Mir-208-P1-v1_3p

mirBase accession

MIMAT0004939

Sequence

35- AUAAGACGAACAAAAGGUUUGU -57

Get sequence

Proposed targets

microrna.org: MIMAT0004939
TargetScanVert: mmu-miR-208b-3p
miRDB: MIMAT0004939