MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-208-P1-v1

Family name MIR-208 (all species)
Seed UAAGACG
Species Cow (Bos taurus)
MiRBase ID bta-mir-208b
Paralogues Bta-Mir-208-P1-v2  Bta-Mir-208-P2 
Orthologues Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Ocu-Mir-208-P1-v2  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037337.1: 21505525-21505581 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)		 Mir-208-P1-v1 NC_037337.1: 21505525-21505581 [+] UCSC Ensembl
Mir-208-P1-v2 NC_037337.1: 21505525-21505581 [+] UCSC Ensembl
Mir-208-P2 NC_037337.1: 21534426-21534482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCGGCCCCACCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCACCCACCUGGGGCAG
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Structure
        10          20        30        40        50        
CCCCGGCCCCACCUCCU--|  C        G          C   CG      UUCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
GACGGGGUCCACCCACGUG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-208-P1-v1_5p*
mirBase accessionNone
Sequence 
0- AAGCUUUUUGCUCGCGUUAUGU -22
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Mature sequence

Bta-Mir-208-P1-v1_3p
mirBase accessionMIMAT0009262
Sequence 
35- AUAAGACGAACAAAAGGUUUGU -57
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Proposed targets TargetScanVert: bta-miR-208b