Mir-208-P1-v2

MirGeneDB ID

Cfa-Mir-208-P1-v2

Family name

MIR-208 (all species)

Seed

AUAAGAC

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-208b

Paralogues

Cfa-Mir-208-P1-v1 Cfa-Mir-208-P2

Orthologues

Bta-Mir-208-P1-v1 Bta-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Lch-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mmu-Mir-208-P1-v1 Mmu-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2 Sha-Mir-208-P1 Sto-Mir-208-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr8: 3665170-3665226 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P1-v2)

Mir-208-P2 chr8: 3636925-3636981 [-] UCSC Ensembl
Mir-208-P1-v1 chr8: 3665170-3665226 [-] UCSC Ensembl
Mir-208-P1-v2 chr8: 3665170-3665226 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAGGGCCCCAGCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGUAGAGUGCUCCCACCAGGGGCAG

Get precursor sequence

Structure

        10          20        30        40        50        
CCAGGGCCCCAGCUCCU--|  C        G          C   CG       UCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGUU    \
                   AGA GGGAGUCU UUUGGAAAAC AGC  AAUAUAA    A
GACGGGGACCACCCUCGUG^  U        G          A   AG       GCCU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-208-P1-v2_5p*

mirBase accession

None

Sequence

0- AAGCUUUUUGCUCGCGUUAUGUU -23

Get sequence

Mature sequence

Cfa-Mir-208-P1-v2_3p

mirBase accession

MIMAT0009869

Sequence

34- UAUAAGACGAACAAAAGGUUUGU -57

Get sequence

Proposed targets

TargetScanVert: cfa-miR-208b
miRDB: MIMAT0009869