| MirGeneDB ID | Bta-Mir-208-P1-v2 |
|---|---|
| Family name | MIR-208 (all species) |
| Seed | AUAAGAC |
| Species | Cow (Bos taurus) |
| MiRBase ID | bta-mir-208b |
| Paralogues | Bta-Mir-208-P1-v1 Bta-Mir-208-P2 |
| Orthologues | Cfa-Mir-208-P1-v1 Cfa-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Lch-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mmu-Mir-208-P1-v1 Mmu-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2 Sha-Mir-208-P1 Sto-Mir-208-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037337.1: 21505525-21505581 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-208-P1-v2) |
Mir-208-P1-v1
NC_037337.1: 21505525-21505581 [+]
UCSC
Ensembl
Mir-208-P1-v2 NC_037337.1: 21505525-21505581 [+] UCSC Ensembl Mir-208-P2 NC_037337.1: 21534426-21534482 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCCCGGCCCCACCUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCACCCACCUGGGGCAGGet precursor sequence |
| Structure | 10 20 30 40 50 CCCCGGCCCCACCUCCU--| C G C CG UCUC UCU CUCUCAGG AAGCUUUUUG UCG UUAUGUU \ AGA GGGAGUCU UUUGGAAAAC AGC AAUAUAA A GACGGGGUCCACCCACGUG^ C G A AG GCCU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Bta-Mir-208-P1-v2_5p* |
| mirBase accession | None |
| Sequence |
0- AAGCUUUUUGCUCGCGUUAUGUU -23
Get sequence
|
| Mature sequence | Bta-Mir-208-P1-v2_3p |
| mirBase accession | MIMAT0009262 |
| Sequence |
34- UAUAAGACGAACAAAAGGUUUGU -57
Get sequence
|
| Proposed targets |
TargetScanVert: bta-miR-208b |
