MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-208-P1-v1

Family name MIR-208 (all species)
Seed UAAGACG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-208b
Paralogues Ocu-Mir-208-P1-v2  Ocu-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Bta-Mir-208-P1-v2  Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr17: 43610547-43610603 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-208-P1-v1)
Mir-208-P2 chr17: 43584310-43584366 [-] UCSC Ensembl
Mir-208-P1-v1 chr17: 43610547-43610603 [-] UCSC Ensembl
Mir-208-P1-v2 chr17: 43610547-43610603 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGGCCCCACUUCCUUCUCCUCUCAGGGAAGCUUUUUGCUCGCAUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGAGCAGAGAGCUCCCACCUGGGGCAG
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Structure
        10          20        30        40        50        
CCCUGGCCCCACUUCCU--|  C        G          C   CA      UUCUC 
                   UCU CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                   AGA GAGAGUCU UUUGGAAAAC AGC  AAUAUA     A
GACGGGGUCCACCCUCGAG^  C        G          A   AG      AGCCU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-208-P1-v1_5p* (predicted)

mirBase accessionMIMAT0048331
Sequence
0- AAGCUUUUUGCUCGCAUUAUGU -22
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Mature sequence

Ocu-Mir-208-P1-v1_3p

mirBase accessionMIMAT0048332
Sequence
35- AUAAGACGAACAAAAGGUUUGU -57
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