MirGeneDB ID | Lch-Mir-208-P1 |
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Family name | MIR-208 (all species) |
Seed | UAAGACG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-208-P2 |
Orthologues | Bta-Mir-208-P1-v1 Bta-Mir-208-P1-v2 Cfa-Mir-208-P1-v1 Cfa-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mmu-Mir-208-P1-v1 Mmu-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Rno-Mir-208-P1-v1 Rno-Mir-208-P1-v2 Sha-Mir-208-P1 Sto-Mir-208-P1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126769.1: 718600-718655 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | CCAGGACCAAGACUGCUUCUCCUCACAGGGAGGCUUUUUGUUCGCGUUAUGUUCGGUGUGAAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGUAGAUUUUGCUGCUGGGGGAAUCGet precursor sequence |
Structure | 10 20 30 40 50 CCAGGACCAAGACUGCU--| CCUC G CG UCGG UCU ACAGG AGGCUUUUUGUUCG UUAUGU U AGA UGUCU UUUGAAAAACAAGC AAUAUA G CUAAGGGGGUCGUCGUUUU^ UGUU G AG AAGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Lch-Mir-208-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCUUUUUGUUCGCGUUAUGU -22
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|
Mature sequence | Lch-Mir-208-P1_3p (predicted) |
mirBase accession | None |
Sequence |
34- AUAAGACGAACAAAAAGUUUGU -56
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|