MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-208-P1

Family name MIR-208 (all species)
Seed UAAGACG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-208-P2 
Orthologues Bta-Mir-208-P1-v1  Bta-Mir-208-P1-v2  Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Gmo-Mir-208-P1  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Ocu-Mir-208-P1-v2  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126769.1: 718600-718655 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGGACCAAGACUGCUUCUCCUCACAGGGAGGCUUUUUGUUCGCGUUAUGUUCGGUGUGAAAUAUAAGACGAACAAAAAGUUUGUCUGUUUGUAGAUUUUGCUGCUGGGGGAAUC
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Structure
        10          20        30        40        50       
CCAGGACCAAGACUGCU--|  CCUC     G              CG      UCGG 
                   UCU    ACAGG AGGCUUUUUGUUCG  UUAUGU    U
                   AGA    UGUCU UUUGAAAAACAAGC  AAUAUA    G
CUAAGGGGGUCGUCGUUUU^  UGUU     G              AG      AAGU 
    110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-208-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCUUUUUGUUCGCGUUAUGU -22
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Mature sequence

Lch-Mir-208-P1_3p (predicted)

mirBase accessionNone
Sequence
34- AUAAGACGAACAAAAAGUUUGU -56
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