MirGeneDB ID | Ete-Mir-208-P1a |
Family name |
MIR-208 (all species) |
Seed |
UAAGACG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-208-P1b
Ete-Mir-208-P2
|
Orthologues |
Bta-Mir-208-P1-v1
Bta-Mir-208-P1-v2
Cfa-Mir-208-P1-v1
Cfa-Mir-208-P1-v2
Cja-Mir-208-P1
Cpo-Mir-208-P1-v1
Cpo-Mir-208-P1-v2
Dno-Mir-208-P1-v1
Dno-Mir-208-P1-v2
Dre-Mir-208-P1
Ebu-Mir-208-o1
Eca-Mir-208-P1-v1
Eca-Mir-208-P1-v2
Gmo-Mir-208-P1
Hsa-Mir-208-P1-v1
Hsa-Mir-208-P1-v2
Laf-Mir-208-P1
Lch-Mir-208-P1
Mal-Mir-208-P1
Mdo-Mir-208-P1
Mml-Mir-208-P1-v1
Mml-Mir-208-P1-v2
Mmr-Mir-208-P1-v1
Mmr-Mir-208-P1-v2
Mmu-Mir-208-P1-v1
Mmu-Mir-208-P1-v2
Mun-Mir-208-P1
Neu-Mir-208-P1
Ocu-Mir-208-P1-v1
Ocu-Mir-208-P1-v2
Pab-Mir-208-P1
Rno-Mir-208-P1-v1
Rno-Mir-208-P1-v2
Sha-Mir-208-P1
Sto-Mir-208-P1
|
Node of Origin (locus) |
E. telfairi
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980297: 4296372-4296428 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCCCGGGCCCACCUCCUUCUCCUCUCAGGAAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCAGAGUGCUCCCACCUGGGCAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCCGGGCCCACCUCCU--| C GA C CG UUCUC
UCU CUCUCAG AAGCUUUUUG UCG UUAUGU \
AGA GGGAGUC UUUGGAAAAC AGC AAUAUA A
AGACGGGUCCACCCUCGUG^ C UG A AG AGCCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-208-P1a_5p* |
mirBase accession | None |
Sequence |
0- AAGCUUUUUGCUCGCGUUAUGU -22
Get sequence
|
Mature sequence |
Ete-Mir-208-P1a_3p |
mirBase accession | None |
Sequence |
35- AUAAGACGAACAAAAGGUUUGU -57
Get sequence
|