Mir-208-P1-v1

MirGeneDB ID

Rno-Mir-208-P1-v1

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-208b

Paralogues

Rno-Mir-208-P1-v2 Rno-Mir-208-P2

Orthologues

Bta-Mir-208-P1-v1 Bta-Mir-208-P1-v2 Cfa-Mir-208-P1-v1 Cfa-Mir-208-P1-v2 Cja-Mir-208-P1 Cpo-Mir-208-P1-v1 Cpo-Mir-208-P1-v2 Dno-Mir-208-P1-v1 Dno-Mir-208-P1-v2 Dre-Mir-208-P1 Ebu-Mir-208-o1 Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2 Ete-Mir-208-P1a Ete-Mir-208-P1b Gmo-Mir-208-P1 Hsa-Mir-208-P1-v1 Hsa-Mir-208-P1-v2 Laf-Mir-208-P1 Lch-Mir-208-P1 Loc-Mir-208-P1c Loc-Mir-208-P1d Loc-Mir-208-P1e Mal-Mir-208-P1 Mdo-Mir-208-P1 Mml-Mir-208-P1-v1 Mml-Mir-208-P1-v2 Mmr-Mir-208-P1-v1 Mmr-Mir-208-P1-v2 Mmu-Mir-208-P1-v1 Mmu-Mir-208-P1-v2 Mun-Mir-208-P1 Neu-Mir-208-P1 Ocu-Mir-208-P1-v1 Ocu-Mir-208-P1-v2 Pab-Mir-208-P1 Sha-Mir-208-P1 Sto-Mir-208-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr15: 33639539-33639595 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P1-v1)

Mir-208-P2 chr15: 33613463-33613519 [-] UCSC Ensembl
Mir-208-P1-v1 chr15: 33639539-33639595 [-] UCSC Ensembl
Mir-208-P1-v2 chr15: 33639539-33639595 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCACCCCCACCUCCUGCUCCUCUCAGGGAAGCUUUUUGCUCGCGUUAUGUUUCUCAUCCGAAUAUAAGACGAACAAAAGGUUUGUCUGAGGGCUGAGUGCACCCACCUGGGGUAC

Get precursor sequence

Structure

        10        20          30        40        50        
AGGCACCCCCACCUCCUG   --|       G          C   CG      UUCUC 
                  CUC  CUCUCAGG AAGCUUUUUG UCG  UUAUGU     \
                  GAG  GGGAGUCU UUUGGAAAAC AGC  AAUAUA     A
CAUGGGGUCCACCCACGU   UC^       G          A   AG      AGCCU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-208-P1-v1_5p*

mirBase accession

MIMAT0017844

Sequence

0- AAGCUUUUUGCUCGCGUUAUGU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-208b-5p
miRDB: MIMAT0017844

Mature sequence

Rno-Mir-208-P1-v1_3p

mirBase accession

MIMAT0017845

Sequence

35- AUAAGACGAACAAAAGGUUUGU -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-208b-3p
miRDB: MIMAT0017845