MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-208-P1

Family name MIR-208 (all species)
Seed UAAGACG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-736
Paralogues
Orthologues Bta-Mir-208-P1-v1  Bta-Mir-208-P1-v2  Cfa-Mir-208-P1-v1  Cfa-Mir-208-P1-v2  Cja-Mir-208-P1  Cpo-Mir-208-P1-v1  Cpo-Mir-208-P1-v2  Dno-Mir-208-P1-v1  Dno-Mir-208-P1-v2  Dre-Mir-208-P1  Ebu-Mir-208-o1  Eca-Mir-208-P1-v1  Eca-Mir-208-P1-v2  Ete-Mir-208-P1a  Ete-Mir-208-P1b  Hsa-Mir-208-P1-v1  Hsa-Mir-208-P1-v2  Laf-Mir-208-P1  Lch-Mir-208-P1  Loc-Mir-208-P1c  Loc-Mir-208-P1d  Loc-Mir-208-P1e  Mal-Mir-208-P1  Mdo-Mir-208-P1  Mml-Mir-208-P1-v1  Mml-Mir-208-P1-v2  Mmr-Mir-208-P1-v1  Mmr-Mir-208-P1-v2  Mmu-Mir-208-P1-v1  Mmu-Mir-208-P1-v2  Mun-Mir-208-P1  Neu-Mir-208-P1  Ocu-Mir-208-P1-v1  Ocu-Mir-208-P1-v2  Pab-Mir-208-P1  Rno-Mir-208-P1-v1  Rno-Mir-208-P1-v2  Sha-Mir-208-P1  Sto-Mir-208-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_3162: 31714-31769 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGAAAAAACGUAAUUCCAUCCUGCAGAUCAGCUUUUUGUUUGUGCUAUGUUGCUUUUAAAAUGUAAGACGAACAAAAAGUUUGUCUGUUAGAUGACCGAGCAACCUUUGUACUA
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Structure
        10          20        30        40        50       
AAAGAAAAAACGUAAUUC--|   CU      C              GC     UGCU 
                    CAUC  GCAGAU AGCUUUUUGUUUGU  UAUGU    U
                    GUAG  UGUCUG UUGAAAAACAAGCA  AUGUA    U
AUCAUGUUUCCAACGAGCCA^   AU      U              GA     AAAU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-208-P1_5p* (predicted)
mirBase accessionMIMAT0044211
Sequence 
0- CAGCUUUUUGUUUGUGCUAUGU -22
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Mature sequence

Gmo-Mir-208-P1_3p
mirBase accessionMIMAT0044212
Sequence 
34- GUAAGACGAACAAAAAGUUUGU -56
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