MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-208-P2

Family name MIR-208 (all species)
Seed UAAGACG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-208-P1 
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cja-Mir-208-P2  Cpi-Mir-208-P2  Cpo-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Gja-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Rno-Mir-208-P2  Sha-Mir-208-P2  Spt-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126769.1: 796955-797011 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGAGUGAGAGAAACCUCUUGUAACAUAUAAGCUUUUUGCUUGGAUUAUGUUUCAUUUUAUCAUAUAAGACGAGCAAAAUGCUUGUUCGCUACAAGGCAAACCUUCGGAAGGAAGG
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Structure
        10          20        30        40        50        
AGAGAGUGAGAGAAACC--|      ACAU      U         GA      UUCAU 
                   UCUUGUA    AUAAGC UUUUGCUUG  UUAUGU     \
                   GGAACAU    UGUUCG AAAACGAGC  AAUAUA     U
GGAAGGAAGGCUUCCAAAC^      CGCU      U         AG      CUAUU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-208-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- AAGCUUUUUGCUUGGAUUAUGU -22
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Mature sequence

Lch-Mir-208-P2_3p (predicted)

mirBase accessionNone
Sequence
35- AUAAGACGAGCAAAAUGCUUGU -57
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