MirGeneDB ID | Lch-Mir-208-P2 |
---|---|
Family name | MIR-208 (all species) |
Seed | UAAGACG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-208-P1 |
Orthologues | Aca-Mir-208-P2 Ami-Mir-208-P2 Bta-Mir-208-P2 Cfa-Mir-208-P2 Cja-Mir-208-P2 Cpi-Mir-208-P2 Cpo-Mir-208-P2 Dno-Mir-208-P2 Eca-Mir-208-P2 Ete-Mir-208-P2 Gja-Mir-208-P2 Hsa-Mir-208-P2 Laf-Mir-208-P2 Mdo-Mir-208-P2 Mml-Mir-208-P2 Mmu-Mir-208-P2 Oan-Mir-208-P2 Ocu-Mir-208-P2 Pab-Mir-208-P2 Pbv-Mir-208-P2 Rno-Mir-208-P2 Sha-Mir-208-P2 Spt-Mir-208-P2 Xla-Mir-208-P2a Xla-Mir-208-P2b Xtr-Mir-208-P2 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126769.1: 796955-797011 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AGAGAGUGAGAGAAACCUCUUGUAACAUAUAAGCUUUUUGCUUGGAUUAUGUUUCAUUUUAUCAUAUAAGACGAGCAAAAUGCUUGUUCGCUACAAGGCAAACCUUCGGAAGGAAGGGet precursor sequence |
Structure | 10 20 30 40 50 AGAGAGUGAGAGAAACC--| ACAU U GA UUCAU UCUUGUA AUAAGC UUUUGCUUG UUAUGU \ GGAACAU UGUUCG AAAACGAGC AAUAUA U GGAAGGAAGGCUUCCAAAC^ CGCU U AG CUAUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Lch-Mir-208-P2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AAGCUUUUUGCUUGGAUUAUGU -22
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|
Mature sequence | Lch-Mir-208-P2_3p (predicted) |
mirBase accession | None |
Sequence |
35- AUAAGACGAGCAAAAUGCUUGU -57
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|