Mir-208-P2

MirGeneDB ID

Eca-Mir-208-P2

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-208a

Paralogues

Eca-Mir-208-P1-v1 Eca-Mir-208-P1-v2

Orthologues

Aca-Mir-208-P2 Ami-Mir-208-P2 Bta-Mir-208-P2 Cfa-Mir-208-P2 Cja-Mir-208-P2 Cpi-Mir-208-P2 Cpo-Mir-208-P2 Dno-Mir-208-P2 Ete-Mir-208-P2 Gja-Mir-208-P2 Hsa-Mir-208-P2 Laf-Mir-208-P2 Lch-Mir-208-P2 Mdo-Mir-208-P2 Mml-Mir-208-P2 Mmu-Mir-208-P2 Oan-Mir-208-P2 Ocu-Mir-208-P2 Pab-Mir-208-P2 Pbv-Mir-208-P2 Rno-Mir-208-P2 Sha-Mir-208-P2 Spt-Mir-208-P2 Xla-Mir-208-P2a Xla-Mir-208-P2b Xtr-Mir-208-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009148.1: 163278781-163278837 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P2)

Mir-208-P2 CM009148.1: 163278781-163278837 [-] UCSC Ensembl
Mir-208-P1-v1 CM009148.1: 163306881-163306937 [-] UCSC Ensembl
Mir-208-P1-v2 CM009148.1: 163306881-163306937 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGGCCCUUACUCACUUCCUGUGACGGGCGAGCUUUUGGCCCGGGUUAUACCUGAUGCUCACGUAUAAGACGAGCAAAAAGCUUGUUGGUCAGAGGAGCUAUCGACGAUCAGCCUG

Get precursor sequence

Structure

        10          20        30        40        50        
GCUGGCCCUUACUCACU--|   G    G           G  C  GG      CUGAU 
                   UCCU UGAC GGCGAGCUUUU GC CG  UUAUAC     \
                   AGGA ACUG UUGUUCGAAAA CG GC  AAUAUG     G
GUCCGACUAGCAGCUAUCG^   G    G           A  A  AG      CACUC 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-208-P2_5p* (predicted)

mirBase accession

None

Sequence

0- GAGCUUUUGGCCCGGGUUAUAC -22

Get sequence

Mature sequence

Eca-Mir-208-P2_3p

mirBase accession

MIMAT0012899

Sequence

35- AUAAGACGAGCAAAAAGCUUGU -57

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