MirGeneDB ID | Spt-Mir-208-P2 |
---|---|
Family name | MIR-208 (all species) |
Seed | UAAGACG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-208-P2 Ami-Mir-208-P2 Bta-Mir-208-P2 Cfa-Mir-208-P2 Cja-Mir-208-P2 Cpi-Mir-208-P2 Cpo-Mir-208-P2 Dno-Mir-208-P2 Eca-Mir-208-P2 Ete-Mir-208-P2 Gja-Mir-208-P2 Hsa-Mir-208-P2 Laf-Mir-208-P2 Lch-Mir-208-P2 Mdo-Mir-208-P2 Mml-Mir-208-P2 Mmu-Mir-208-P2 Oan-Mir-208-P2 Ocu-Mir-208-P2 Pab-Mir-208-P2 Pbv-Mir-208-P2 Rno-Mir-208-P2 Sha-Mir-208-P2 Xla-Mir-208-P2a Xla-Mir-208-P2b Xtr-Mir-208-P2 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01009531.1: 1544035-1544093 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGGGGUUCCCUGGCGCUGCCUCUGACGAGGAGGCUUUUGGCUCGGGUUAUAUGGACGCUAGCAGGGUAUAAGACGAGCGAAAAGCUUUUUGGUUGGAGGAGAGACCCACCCCCCCACCCGet precursor sequence |
Structure | 10 20 30 40 50 UGGGGUUCCCUGGCGCUG--| UG G G GG GGACGC CCUC AC AGGAGGCUUUU GCUCG UUAUAU \ GGAG UG UUUUUCGAAAA CGAGC AAUAUG U CCCACCCCCCCACCCAGAGA^ GU G G AG GGACGA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Spt-Mir-208-P2_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCUUUUGGCUCGGGUUAUAU -22
Get sequence
|
Mature sequence | Spt-Mir-208-P2_3p (predicted) |
mirBase accession | None |
Sequence |
37- AUAAGACGAGCGAAAAGCUUUU -59
Get sequence
|