MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-208-P2

Family name MIR-208 (all species)
Seed UAAGACG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-208-P2  Ami-Mir-208-P2  Bta-Mir-208-P2  Cfa-Mir-208-P2  Cja-Mir-208-P2  Cpi-Mir-208-P2  Cpo-Mir-208-P2  Dno-Mir-208-P2  Eca-Mir-208-P2  Ete-Mir-208-P2  Gja-Mir-208-P2  Hsa-Mir-208-P2  Laf-Mir-208-P2  Lch-Mir-208-P2  Mdo-Mir-208-P2  Mml-Mir-208-P2  Mmu-Mir-208-P2  Oan-Mir-208-P2  Ocu-Mir-208-P2  Pab-Mir-208-P2  Pbv-Mir-208-P2  Rno-Mir-208-P2  Sha-Mir-208-P2  Xla-Mir-208-P2a  Xla-Mir-208-P2b  Xtr-Mir-208-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01009531.1: 1544035-1544093 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGGGUUCCCUGGCGCUGCCUCUGACGAGGAGGCUUUUGGCUCGGGUUAUAUGGACGCUAGCAGGGUAUAAGACGAGCGAAAAGCUUUUUGGUUGGAGGAGAGACCCACCCCCCCACCC
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Structure
        10          20        30        40        50         
UGGGGUUCCCUGGCGCUG--|   UG  G           G     GG      GGACGC 
                    CCUC  AC AGGAGGCUUUU GCUCG  UUAUAU      \
                    GGAG  UG UUUUUCGAAAA CGAGC  AAUAUG      U
CCCACCCCCCCACCCAGAGA^   GU  G           G     AG      GGACGA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Spt-Mir-208-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGCUUUUGGCUCGGGUUAUAU -22
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Mature sequence

Spt-Mir-208-P2_3p (predicted)

mirBase accessionNone
Sequence
37- AUAAGACGAGCGAAAAGCUUUU -59
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