MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-1329-v2

Family name MIR-1329 (all species)
Seed CAGUGAU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1329
Paralogues Oan-Mir-1329-v1 
Orthologues Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v2  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v2  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041728.1: 86137751-86137809 [+]
Clustered miRNAs
(< 50kb from Mir-1329-v2)
Mir-1329-v1 NC_041728.1: 86137750-86137810 [+]
Mir-1329-v2 NC_041728.1: 86137751-86137809 [+]
Precursor
(pre-Mir +30nt flank)
AAGGAGGAAUCUCAAUCUGGUUGUAGGGGUACAGUGAUCAGGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUCGGUCACGAUAUCCAUAUGACUCGAAGAGCAACAAUUUUGGU
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Structure
        10          20        30        40        50         
AAGGAGGAAUCUCAAUCU--|  UG  G     CA      AG       U  AUUUCUC 
                    GGU  UA GGGUA  GUGAUC  GUUACGA GG       A
                    UCA  AU CCUAU  CACUGG  CGAUGCU CC       A
UGGUUUUAACAACGAGAAGC^  GU  A     AG      CU       -  AACAAUG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1329-v2_5p

mirBase accessionMIMAT0006798
Sequence
0- ACAGUGAUCAGGUUACGAUGGAU -23
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Star sequence

Oan-Mir-1329-v2_3p*

mirBase accessionMIMAT0006799
Sequence
37- CCUCGUAGCUCGGUCACGAUAU -59
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