MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-1329

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1329-v1  Aca-Mir-1329-v2  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cli-Mir-1329-v2  Cmi-Mir-1329  Cpi-Mir-1329-v1  Cpi-Mir-1329-v2  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gga-Mir-1329-v2  Gja-Mir-1329-v1  Gja-Mir-1329-v2  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Oan-Mir-1329-v2  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Tgu-Mir-1329-v2  Xla-Mir-1329-P1  Xla-Mir-1329-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr5: 134486378-134486438 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCGAGACCUAUCAAUCUAGUUGUAGGGGUACAGUGAUCAGGUUACGAUGGAUUUCUGAAGUAACGGCCUCGUAACUUGGUCACCAUAUCCAUAUGACUCAGAUAACUACGCUGUUCUGU
Get precursor sequence
Structure
        10          20        30        40        50        60
UUUCGAGACCUAUCAAU-  -|  UG  G     CA               U  AUUUCUG 
                  CU AGU  UA GGGUA  GUGAUCAGGUUACGA GG       A
                  GA UCA  AU CCUAU  CACUGGUUCAAUGCU CC       A
UGUCUUGUCGCAUCAAUA  C^  GU  A     AC               -  GGCAAUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-1329_5p
mirBase accessionNone
Sequence 
0- UACAGUGAUCAGGUUACGAUGGA -23
Get sequence
Star sequence

Xtr-Mir-1329_3p* (predicted)
mirBase accessionNone
Sequence 
39- CUCGUAACUUGGUCACCAUAUC -61
Get sequence