MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-1329-v1

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1329
Paralogues Tgu-Mir-1329-v2 
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Cpi-Mir-1329-v1  Ebu-Mir-1329  Gga-Mir-1329-v1  Gja-Mir-1329-v1  Mdo-Mir-1329  Mun-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
3: 15194064-15194124 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1329-v1)
Mir-1329-v1 3: 15194064-15194124 [-] UCSC Ensembl
Mir-1329-v2 3: 15194065-15194123 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGACACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCAGGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAACAGGUUUCUUU
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Structure
        10          20        30        40        50        60
UAGACACAAGUCUUGGU--|U   UG   A    CA               U  AUUUCUC 
                   C GGU  UAG GAUA  GUGAUCAGGUUACGA GG       A
                   G UCA  AUC CUAU  CACUAGUUCGAUGCU CC       A
UUUCUUUGGACAACAAAGA^U   GU   C    AG               -  AACAAUG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1329-v1_5p

mirBase accessionMIMAT0014449
Sequence
0- UACAGUGAUCAGGUUACGAUGGA -23
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Star sequence

Tgu-Mir-1329-v1_3p*

mirBase accessionMIMAT0026956
Sequence
39- CUCGUAGCUUGAUCACGAUAUC -61
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