MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-1329-v1

Family name MIR-1329 (all species)
Seed ACAGUGA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-1329
Paralogues Cpi-Mir-1329-v2 
Orthologues Aca-Mir-1329-v1  Ami-Mir-1329  Bta-Mir-1329  Cli-Mir-1329-v1  Cmi-Mir-1329  Ebu-Mir-1329  Eca-Mir-1329  Gga-Mir-1329-v1  Gja-Mir-1329-v1  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Oan-Mir-1329-v1  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Tgu-Mir-1329-v1  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584609: 7904401-7904461 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1329-v1)		 Mir-1329-v1 JH584609: 7904401-7904461 [-] UCSC Ensembl
Mir-1329-v2 JH584609: 7904402-7904460 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAUGGGUCUCUCAGUCUGGUUGUAGGGAUACAGUGAUCAGGUUACGAGGGAUUUCUCAAGUAACAACCUCGUAGCUCGGUCACGAUAUCCCUAUGACUUAGAUAACAACAGGUUUAACC
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Structure
        10          20        30        40        50          
AUGAUGGGUCUCUCAGU-  -|  UG        CA      AG         GAUUUCUC 
                  CU GGU  UAGGGAUA  GUGAUC  GUUACGAGG        \
                  GA UCA  AUCCCUAU  CACUGG  CGAUGCUCC        A
CCAAUUUGGACAACAAUA  U^  GU        AG      CU         AACAAUGA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-1329-v1_5p
mirBase accessionMIMAT0037912
Sequence 
0- UACAGUGAUCAGGUUACGAGGGA -23
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Star sequence

Cpi-Mir-1329-v1_3p*
mirBase accessionNone
Sequence 
39- CUCGUAGCUCGGUCACGAUAUC -61
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